PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G227500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family LBD
Protein Properties Length: 194aa    MW: 21615.3 Da    PI: 6.4951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G227500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.7e-3871071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        aC aCk+lrrkC ++C++apyf +++ + +fa+vhk+FGasn++kll++lp ++r++a+ ++ yeA ar+++PvyG+vg i++l++q+++l+
  Aqcoe2G227500.1.p   7 ACGACKFLRRKCDNGCIFAPYFDHDEgATHFAAVHKVFGASNISKLLRNLPVHNRSEAAITISYEALARMQNPVYGCVGQIFALRHQVAKLQ 98 
                        7***********************9979**************************************************************** PP

             DUF260  92 aelallkee 100
                        ++l+ ++++
  Aqcoe2G227500.1.p  99 EQLEITETQ 107
                        ***998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0746108IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSFRSACGA CKFLRRKCDN GCIFAPYFDH DEGATHFAAV HKVFGASNIS KLLRNLPVHN  60
RSEAAITISY EALARMQNPV YGCVGQIFAL RHQVAKLQEQ LEITETQYAA SAANFNSHQN  120
FQVSHNIMNG KQPSDLCHAT NGNTAISVLN NNIDLQNPLC EGRGQSLCFD SINEWSSFDK  180
IYEEMNQEMY LDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490916.12e-59PREDICTED: LOB domain-containing protein 33
SwissprotQ9M2J75e-49LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A059BH539e-54A0A059BH53_EUCGR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-50lateral organ boundaries-domain 29